Middlebury College
At Middlebury I am teaching or have taught:
- CSCI150 “Computing for the Sciences” (Fall 2016, Fall 2017, Fall 2018, Fall 2019, Fall 2021, Fall 2022, Fall 2023)
- CSCI311 “Artificial Intelligence” (Fall 2022)
- CSCI312 “Software Development” (Spring 2018, Spring 2019, Spring 2020, Spring 2023, Fall 2023, Spring 2024)
- CSCI321 “Bioinformatics Algorithms” (Spring 2017, Spring 2019, Spring 2022, Spring 2024)
- CSCI416 “Parallel Computing” (Spring 2020, Spring 2023)
- CSCI433 “Compiler Design” (Fall 2017, Fall 2019)
- CSCI701 “Senior Seminar” (Fall 2016, Spring 2017, Spring 2018, Fall 2018)
- CSCI1007 “Human Genome Analysis” (Winter 2019)
Mount Sinai
At Mount Sinai I co-created and co-directed multiple courses, most notably BSR6402 “Practical
Analysis of Your Personal Genome” (PAPG) and its prerequisite BSR2401 “Introduction to
Human Genome Sequencing”.
PAPG is a unique laboratory-style medical genomics course, first taught in
2012, in which students have the opportunity to sequence and analyze their own
whole genome. PAPG has been
discussed in
a
wide
variety
of
settings. PAPG
and a companion research study evaluating student attitudes towards and the
outcomes of incorporating personal genome sequencing into graduate genomics
education are described in the following publications:
- Linderman MD, Sanderson SC, Bashir A, Diaz GA, Kasarskis A, Zinberg R, et al. Impacts of incorporating personal genome sequencing into graduate genomics education: a longitudinal study over three course years. BMC Med Genomics. 2018;11(1):5.
- Linderman MD, Bashir A, Diaz GA, Kasarskis A, Sanderson SC, Zinberg RE, et al. Preparing the next generation of genomicists: a laboratory-style course in medical genomics. BMC Med Genomics. 2015;8:47.
- Sanderson SC, Linderman MD, Zinberg R, Bashir A, Kasarskis A, Zweig M, Suckiel S, Shah H, Mahajan M, Diaz GA, Schadt EE. How Do Students React to Analyzing Their Own Genomes in a Whole-Genome Sequencing Course?: Outcomes of a Longitudinal Cohort Study. Genet Med. 2015;17: 866–74.
- Sanderson SC, Linderman MD, Kasarskis A, Bashir A, Diaz GA, Mahajan M, Shah H, Wasserstein M, Zinberg RE, Zweig M, Schadt EE. Informed decision-making among students analyzing their personal genomes on a whole genome sequencing course: a longitudinal cohort study. Genome Med. 2013 Dec 30;5(12):113.